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Project name KAKENHI (208059)
Area Genome Informatics
Purpose

In order to support high-throughput screening for ligands of G-protein coupled receptors (GPCRs) by using bioinformatics technology, we introduce a database (SEVENS) with genome-scale annotation.

Introduction

To perform an overview of the GPCR universe, it is necessary to treat a large data space, which should include not only the expressed sequences but also the newly identified sequences that cannot be detected by experiments, although they definitely exist on the genome sequence and are just waiting for the opportunity to express their functions. For this purpose, we have been developed SEVENS which includes GPCR genes that are identified with high accuracy from complete genomes of eukaryotes.

Keyword GPCR|Genome|Function|annotation|
Started fiscal year 2007-2008
Project head Makiko Suwa
Institute of the head Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)
Budget (million yen) 5
Representative Institute of the commission None
Companies None
Published papers (PubMed IDs) PMID: 16126348, Automatic gene collection system for genome-scale overview of G-protein coupled receptors in eukaryotes. Ono Y, Fujibuchi W, Suwa M. Gene. 2005 Dec 30;364:63-73.
Patent (Japan, overseas) なし

Product (Database, Tool)

SEVENS

Summary SEVENS database includes G-protein coupled receptors (GPCR) genes with seven transmembrane helices, that are identified with high accuracy from complete genomes of 32 eukaryotes, by a pipeline integrating such software as a gene finder, a sequence alignment tool, a motif and domain assignment tool, and a TMH predictor.
Data type Ptotein-sequence amino acid sequence

Relating project

Nothing