More information
| Project name | BIRD/Japan Science and Technology Corporation (JST) |
|---|---|
| Area | Genome Informatics |
| Purpose | a novel classification of enzyme catalytic mechanisms has been proposed. In this project, we are trying to develop a system to predict enzyme reactions based on the enzyme reaction classification. |
| Introduction | In this project, we are trying to develop a system to predict enzyme functions, that is reactions, using machine learning and enzyme reaction classification. |
| Keyword | Enzyme | reaction |
| Started fiscal year | 2007-2010 |
| Project head | Nozomi Nagano |
| Institute of the head | Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST) |
| Budget (million yen) | Under investigation |
| Representative Institute of the commission | National Institute of Advanced Industrial Science and Technology |
| Companies | Ochanomizu Univ. |
| Published papers (PubMed IDs) | Under investigation |
| Patent (Japan, overseas) | Under investigation |
Product (Database, Tool)
EzCatDB
|
Summary | The EzCatDB database analyzes and classifies enzyme catalytic mechanisms on the basis of information from literature and data that are derived from entries in the Protein Data Bank (PDB). Each data set contains corresponding enzyme information, such as E.C. number, PDB entries with their annotated ligand information and active site residues, and catalytic mechanisms. |
|---|---|---|
| Data type | Protein-structure Enzyme |
Relating project
Nothing