<?xml version='1.0' encoding='UTF-8'?>
<results country_code='en' xmlns:collection='/collection.xml' xmlns='/lsdb_tree.xml'>
  <category name='MEDALS Catalog' node_url='http://cs14.dbcls.jp:1978/node/medals' id='medals'>
    <database title='LAST' url='http://last.cbrc.jp/' update_rate='33' id='69' mdate='2012/05/07' alias_name='None'>
      <collection:specification data_type='DNA' data_volume='0.4' spec_class='Tool'>
        <collection:id_type id='None'/>
        <collection:related_id_type id='None'/>
        <collection:mol_type primary='yes' type='DNA-sequence'/>
        <collection:mol_type/>
        <collection:mol_type/>
        <collection:mol_type type='RNA'/>
        <collection:mol_type/>
        <collection:mol_type type='protein'/>
        <collection:mol_type/>
        <collection:mol_type type='user-defined'/>
        <collection:mol_type type='alphabet.'/>
        <collection:interface type='CUI (Character User Interface, or Command line) '/>
      </collection:specification>
      <collection:medals id='69' list_url='http://www.medals.jp/elist/detail/69' site_image='http://medals.jp/images/thumnail/LAST.ja.jpg'/>
      <collection:input_example>The inputs are (multi-)fasta format sequences.The LAST download includes some in its &quot;examples&quot; directory.</collection:input_example>
      <collection:method_download>Download from the page http://last.cbrc.jp/archive/</collection:method_download>
      <collection:resource name='None'/>
      <collection:taxonomy primary='yes'/>
      <collection:taxonomy name='All species'/>
      <collection:operation country='Japan'>
        <collection:organization name='Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)'/>
      </collection:operation>
      <collection:legal/>
      <collection:legal condition='GNU GPL'/>
      <collection:article>Adaptive seeds tame genomic sequence comparison. SM Kielbasa, R Wan, K Sato, P Horton, MC Frith, Genome Research 2011.  | Incorporating sequence quality data into alignment improves DNA read mapping. MC Frith, R Wan, P Horton, NAR 2010.  | Parameters for accurate genome alignment. MC Frith, M Hamada, P Horton, BMC Bioinformatics 2010.</collection:article>
      <collection:keyword word='Comparative genomics'/>
      <collection:keyword word='sequence tag mapping'/>
      <collection:keyword word='spaced seeds'/>
      <collection:keyword word='suffix array'/>
      <collection:keyword word='Vmatch'/>
      <collection:keyword word='X-drop algorithm'/>LAST is a software for comparing and aligning sequences, typically DNA or protein sequences. LAST is similar to BLAST, but it copes better with very large amounts of sequence data. It can also report probabilities for every pair of aligned letters, indicating the reliability of each pairing. </database>
  </category>
</results>
