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ARCHAIC

Summary The database provides DNA sequences of archaebacterial genomes and their annotation. The aim of ARCHAIC is to analyze archaebacterial genomic DNA sequences (including originally determined ones) in order to understand the overall organization of the genomes and compare different species. Original informatical methods were developed for identifying genes, pseudo-genes, and operons essentially on the basis of a statistical analysis of transcription and translation signals. Three archaes data are available (Pyrococcus sp. OT3, Thermoplasma volcanium GSS1, Archaeoglobus fulgidus).
Data type DNA-sequence , genome

ASTRA

Summary ASTRA is a database that classifies alternative splicing patterns and alternative transcriptional initiation patterns of Human, Mouse, D.melanogaster, C.elegans, A.thaliana, O. sativa. (cited from the original site)
Data type DNA-sequence

CGH Data Base

Summary CGH Database is a database for array CGH (Comparative Genomic Hybridization)analysis data of various cancer cell lines. NEDO project products is includes in CGH Data Base.
Data type Disease-cancer

Database for genetic engineering of microalgae

Summary Useful information for genetic engineering of microalgae is collected in the database. The information is categorized as follows; 1. host - vector (structure of vector, promoter, research institute, papers) 2. gene transfer technique (organism, method, papers) 3. production of useful materials (product, host, transferred genes, papers) 4. inhibitor tolerant mutants (organism, inhibitor, mutant gene, papers) 5. synthetic transposon 6. selective marker (from original site)
Data type DNA-regration-region

Database of genomes and transcriptional regulations for filamentous fungi

Summary The filamentous fungus, Aspergillus oryzae, plays an important role in the Japanese sake and fermentation industry, and many industrial enzymes are produced by this organism. We hope this database will provide you useful information for your research and industrial applications.
Data type DNA-sequence

Evola

Summary Evola (Evolutionary annotation database) is a database providing ortholog information of H-InvDB human genes. Evola contains orthologs of human and 13 species' genes (chimpanzee, macaque, mouse, rat, dog, horse, cow, opossum, chicken, zebrafish, medaka, Tetraodon, and fugu). Viewers of sequence alignments and phylogenetic trees, transcript variants (Locus maps), and natural selection (dN/dS view) are implemented. Duplicate gene family viewer is also available.
Data type Comparative genomics

FLJ Human cDNA Database

Summary FLJ human cDNA database was constructed as human cDNA sequence analysis database focused on mRNA varieties caused by variations of transcription start site (TSS) and splicing. Human gene number was estimated to be 20-25 thousand. However number of human mRNA varieties was predicted to be about 100 thousand. The varieties are thought to be caused by variations of TSS and splicing. In our previous human cDNA project, about 30 thousand of FLJ human full-length sequenced cDNAs were deposited to DDBJ/GenBank/EMBL, and we obtained about 1.4 million of 5'-end sequences (5'-EST) of FLJ full-length cDNAs from about 100 kinds of cDNA libraries consist of human tissues and cells constructed by oligo-capping method.(cited from original site)
Data type DNA-sequence full length cDNA

G-compass

Summary G-compass was designed as a tool for the study of comparative genomics. It provides the data of evolutionarily conserved genomic regions and orthologous genes between human and 12 vertebrates (chimpanzee, rhesus monkey, mouse, rat, dog, cow, horse, opossum, chicken, zebrafish, medaka and Tetraodon). Information of ultraconserved elements (UCE) and copy number variable regions (CNV) are provided. Sliding window analysis and dot plot analysis are also implemented.
Data type Comparative genomics

GGDB

Summary Glycogene includes genes associated with glycan synthesis such as glycosyltransferase, sugar nucleotide synthases, sugar-nucleotide transporters, sulfotransferases, etc. In "Construction of GlycoGene Library Project " (April, 2001 - March, 2004), we collected and compiled the data on such glycogenes as GlycoGene Database (GGDB), which is the first database to store information on substrate specificity.
Data type DNA-sequence Substrates, Expression

GenoBase

Summary Scope of database (GenoBase) is to understand comprehensively the living-cell system of Escherichia coli K-12 (W3110). Until now, GenoBase is the public repository for Sequence Information, Proteome, Transcriptome, Bioinformatics, and Knowledge based on literature concerning E.coli. The results of the NEDO project was contained.
Data type Annotation
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