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Genome / Gene( 10/69 )

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ARCHAIC

Summary The database provides DNA sequences of archaebacterial genomes and their annotation. The aim of ARCHAIC is to analyze archaebacterial genomic DNA sequences (including originally determined ones) in order to understand the overall organization of the genomes and compare different species. Original informatical methods were developed for identifying genes, pseudo-genes, and operons essentially on the basis of a statistical analysis of transcription and translation signals. Three archaes data are available (Pyrococcus sp. OT3, Thermoplasma volcanium GSS1, Archaeoglobus fulgidus).
Data type DNA-sequence , genome

ASTRA

Summary ASTRA is a database that classifies alternative splicing patterns and alternative transcriptional initiation patterns of Human, Mouse, D.melanogaster, C.elegans, A.thaliana, O. sativa. (cited from the original site)
Data type DNA-sequence

Acacia EST database

Summary The database contains 6253 EST sequences of Acacia, an economic plant.　The database has BLAST search function.
Data type DNA-sequence EST

CGH Data Base

Summary CGH Database is a database for array CGH (Comparative Genomic Hybridization)analysis data of various cancer cell lines. NEDO project products is includes in CGH Data Base.
Data type Disease-cancer

DOGAN

Summary You can get the results of microbial sequence data, gene information (ORF), gene map, motifs, paper as the basis of estimated genes and proteome analysis from DOGAN. This information has been published to confirm the annotater, re-annotation is also in line with the passage of time. In addition, Blast homology search using the service and, DNA cloning service orders.
Data type DNA-sequence , Proteome

Database for genetic engineering of microalgae

Summary Useful information for genetic engineering of microalgae is collected in the database. The information is categorized as follows; 1. host - vector (structure of vector, promoter, research institute, papers) 2. gene transfer technique (organism, method, papers) 3. production of useful materials (product, host, transferred genes, papers) 4. inhibitor tolerant mutants (organism, inhibitor, mutant gene, papers) 5. synthetic transposon 6. selective marker (from original site)
Data type DNA-regration-region

Database of Genomic Variants

Summary The objective of the Database of Genomic Variants is to provide a comprehensive summary of structural variation in the human genome. We define structural variation as genomic alterations that involve segments of DNA that are larger than >1kb. Now we also annotate InDels in 100bp-1kb range. The content of the database is only representing structural variation identified in healthy control samples. The Database of Genomic Variants provides a useful catalog of control data for studies aiming to correlate genomic variation with phenotypic data. The database is continuously updated with new data from peer reviewed research studies. (cited from original site.) The database include the products data.
Data type DNA-polymol

Database of genomes and transcriptional regulations for filamentous fungi

Summary The filamentous fungus, Aspergillus oryzae, plays an important role in the Japanese sake and fermentation industry, and many industrial enzymes are produced by this organism. We hope this database will provide you useful information for your research and industrial applications.
Data type DNA-sequence

Evola

Summary Evola (Evolutionary annotation database) is a database providing ortholog information of H-InvDB human genes. Evola contains orthologs among human and 14 vertebrates (chimpanzee, macaque, mouse, rat, dog, horse, cow, opossum, chicken, zebrafish, medaka, Tetraodon, and fugu). Evolutionary bioligical information such as protein multiple alignments, phylogenetic trees, transcript variants, and the degree of natural selection (dN/dS) are implemented.
Data type Comparative genomics

FLJ Human cDNA Database

Summary FLJ human cDNA database was constructed as human cDNA sequence analysis database focused on mRNA varieties caused by variations of transcription start site (TSS) and splicing. Human gene number was estimated to be 20-25 thousand. However number of human mRNA varieties was predicted to be about 100 thousand. The varieties are thought to be caused by variations of TSS and splicing. In our previous human cDNA project, about 30 thousand of FLJ human full-length sequenced cDNAs were deposited to DDBJ/GenBank/EMBL, and we obtained about 1.4 million of 5'-end sequences (5'-EST) of FLJ full-length cDNAs from about 100 kinds of cDNA libraries consist of human tissues and cells constructed by oligo-capping method.(cited from original site)
Data type DNA-sequence full length cDNA
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