More information

Relating project

Name H-ANGEL
Aliases he Human Anatomic Gene Expression Library
Description H-ANGEL is a resource which provides information on human gene expression. H-ANGEL displays expression patterns of transcriptional products generated by the H-Invitational project in practical tissue categories based on tissue-specific expression data from several experimental platforms. H-ANGEL also displays information for the expression of different genes at their corresponding physical positions in the human genome. This information is linked to the corresponding transcript or locus annotation data stored in H-InvDB.
Type DB
Main Institutes of management Japan Biological Informatics Consortium (JBiC) | Biomedicinal Information Research Center (BIRC), National Institute of Advanced Industrial Science and Technology (AIST)
Country of the Institute Japan
URL of the site http://h-invitational.jp/hinv/h-angel/
Interface GUI
Input example Select a data ID type from pull-down menus, input the ID to text box. Then push "Submit" button. Meanwhile, push "Go to Pattern Search" button.
Amount of the all data for download（Mbyte） | Method to obtain the all data. 21.4 | http://h-invitational.jp/hinv/download/h-angel/H-ANGEL_matrix.txt.gz
External resources (databases) in building the product. The expression data from an external institution is used. Refer to "4.4.4 Summary of all the Expression Data Sources used by H-ANGEL.(H-InvDB_3.0)" on the site(http://www.h-invitational.jp/hinv/help/help_index_jp.html) for details.
Data type Gene expression
Biological species in the main concern Human
Conditions of use Under investigation
Frequency of updates (in last two years) 1
Last date of updates (date of confirmation) 2007/12/26 (2009/01/21)
Main IDs used in the products H-Inv locus ID | Accession Number | UniGene ID | LocusLink ID | OMIM ID | Definition(Genbank) | Product(Genbank)
How to make a link to get access to each IDs. http://h-invitational.jp/hinv/h-angel/wge_server.cgi?gpid=[HIX ID]
external databases to which this database/tool have links UniGene(http://www.ncbi.nlm.nih.gov/sites/entrez?db=unigene) | BodyMap(http://bodymap.ims.u-tokyo.ac.jp/) | LSBM(http://www.lsbm.org/site_e/database/about.html)
Published papers (PubMed IDs) Under investigation

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Project name Genome Information Integration Project (GIIP)
Area Genome Informatics
Purpose # construction of "all human gene catalogue" # development of annotation technique based on H-InvDB # data integration of disease, gene expression and PPI information
Introduction GIIP project was a model project of METI, which executed for 3 years since 2005 to 2007. The representative institute of the commission was Japan Biological Informatics Consortium (JBIC) and also the other six research institutes took their parts. The aim of the project is to construct an annotated human gene database of the world highest quality, based on H-Invitational Database (H-InvDB).
Keyword genome | gene | annotation | integrated | database
Patent (Japan, overseas) JP-2006-323830 | JP-2008-097189
Archives
The report on "Genome Information Integration Project (GIIP)" 2005-2007. Japanese.
Product (Database, Tool) Nothing

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Project name Life science database integration project
Area Genome Informatics
Purpose This project aims to facilitate the research and development in both industry and academia.
Introduction The project develops a portal site that provides various information on databases and analysis tools for life science which were developed by the projects directly sponsored by METI, or developed by the Institutes sponsored by METI. The second aim is to develop an integrated system to utilize the various outcomes related to METI, based on H-Invitationl DB (all human gene database) that was developed in "Genome Information Integration Project (GIIP)".
Keyword database | analysis tool | product | portal | integration
Patent (Japan, overseas) -
Archives
The report on "METI life science database project" 2008-2011. Japanese.
Product (Database, Tool) Nothing