More information XML output
| Name | HGPD |
|---|---|
| Aliases | Human Gene and Protein Database |
| Description | HGPD is a unique database that stores the information of a set of human Gateway entry clones and protein expression data and helps the user to search the Gateway entry clones. In the full-length human cDNA sequencing project (FLJ project at NEDO), nucleotide sequences of approximately 30000 human cDNA clones have been analyzed.(cited from paper http://nar.oxfordjournals.org/cgi/content/abstract/gkn872?ijkey=zKpNqhZH6jrUuzi&keytype=ref) |
| Type | DB |
| Main Institutes of management | Biomedicinal Information Research Center (BIRC), National Institute of Advanced Industrial Science and Technology (AIST) |
| Country of the Institute | Japan |
| URL of the site | http://hgpd.lifesciencedb.jp/cgi/ |
| Interface | GUI |
| Input example | Input the Accession No.“AK092682” in the text box on the upper side of the top page, the push “submit” button. |
| Keyword |
FLJ cDNAs | Gateway Entry Clones | Protein Analysis Data | Subcellular Localizaiton
|
| Amount of the all data for download（Mbyte） | Method to obtain the all data. | 48 | Download from the page http://hgpd.lifesciencedb.jp/sys_info/download.html |
| External resources (databases) in building the product. | Under investigation |
| Data type | DNA-sequence |
| Biological species in the main concern |
Human
|
| Conditions of use | Under investigation |
| Frequency of updates (in last two years) | 7 |
| Last date of updates (date of confirmation) | 2010/07/12 (2011/09/15) |
| Main IDs used in the products | GenBank Accession No. | Sequence ID |
| How to make a link to get access to each IDs. | http://hgpd.lifesciencedb.jp/SVDB_v05/cgi/sv_cdna_info.cgi?cdna=C-SKMUS2000679 |
| external databases to which this database/tool have links | NCBI | DDBJ | FLJ Human cDNA Database | FLJ-DB | H-Inv DB | NEDO | HUGE | MGC | The German Human cDNA Project | UniGene | CGAP | SAGE | TIGR Gene Indices | STACK | BODYMAP | NITE | AIST | Japan Biological Informatics Consortium | Research Association for Biotechnology | Reverse Proteomics Research Institute |
| Published papers (PubMed IDs) | 19054851 | 19073703 |
| Project name | Full-length Human cDNA Sequencing Project |
|---|---|
| Area | Genome Informatics |
| Purpose | The team for Long cDNA sequencing were supplied with libraries prepared by Kazusa DNA Research Institute (Kazusa), mostly 4-5kbplong cDNAs. In this project, total 7,252 clones of full-length human cDNA sequence were determined and 519,000 partial sequence data were also determined.(cited from the reports) |
| Introduction | In Japan, since fulllength cDNA isolation technique was taking the lead in the world, “Full-length Human cDNA Sequencing Project” was started in 1999 supported by the supplementary Japanese government budget. In 2000, this project was continued as one of the core projects of so called “Millennium Project” by the Japanese government. In this year, under project, 8,873 clones of full-length human cDNA sequence including 417 short clones were determined and 469,000 partial sequence data were also obtained. All together, in the Millennium Project, 21,017 clones of full-length human cDNA sequence and 1,504,000 partial sequence were determined. (cited from the reports) |
| Keyword | Under investigation |
| Patent (Japan, overseas) | Under investigation |
| Product (Database, Tool) | Nothing |