More information XML output
| Name | H-DBAS |
|---|---|
| Aliases | Human-transcriptome DataBase for Alternative Splicing |
| Description | H-DBAS is a database of human alternative splicing (AS) based on H-InvDB. H-DBAS offers various annotated informarion of genome-wide human AS variants. The fullness of AS variants were ensured and the representative AS variants (RASVs) were then selected. H-DBAS includes an interactive viewer constructed by Flash. In the viewer, RASVs affecting protein functions, the conservation of RASVs between human and mouse, rat, chimpanzee, macaque and dog by comparative genomics and so on can be displayed.
|
| Type | DB |
| Main Institutes of management | Biomedicinal Information Research Center (BIRC), National Institute of Advanced Industrial Science and Technology (AIST) |
| Country of the Institute | Japan |
| URL of the site | http://www.h-invitational.jp/h-dbas/?lang=en |
| Interface | GUI |
| Input example | Click links located at the right side of "Search item samples for Simple search at upper right (direct links)". |
| Keyword |
alternative splicing | comparative genomics | RNA-Seq
|
| Amount of the all data for download（Mbyte） | Method to obtain the all data. | 3000 | http://h-invitational.jp/h-dbas/download.jsp |
| External resources (databases) in building the product. | H-InvDB|DDBJ|Refseq|Ensembl|UCSC|FANTOM3|MGC|dbSNP |
| Data type | Human and mouse full-length cDNA | Human and mouse mRNA | Rat, chimpanzee, macaque and dog RNA |
| Biological species in the main concern |
Human
, Mouse, Rat, Chimpanzee, Macaque and Dog
|
| Conditions of use | Attribution&Share Alike User account is not required. |
| Frequency of updates (in last two years) | 4 or more times / year |
| Last date of updates (date of confirmation) | 2011/12/26 (2011/12/27) |
| Main IDs used in the products | HIT(transcript) | HIX(gene cluster) | Accession Number | HUGO Gene Symbol | NCBI Gene ID | OMIM ID | EC number |
| How to make a link to get access to each IDs. | http://www.h-invitational.jp/h-dbas/locusOverview.do?dbname=human_flcdna(or human_mrna)&hix=[HIXID] |
| external databases to which this database/tool have links | Under investigation |
| Published papers (PubMed IDs) | 19969536 | 17130147 |
| Project name | Genome Information Integration Project (GIIP) |
|---|---|
| Area | Genome Informatics |
| Purpose | # construction of "all human gene catalogue" # development of annotation technique based on H-InvDB # data integration of disease, gene expression and PPI information |
| Introduction | GIIP project was a model project of METI, which executed for 3 years since 2005 to 2007. The representative institute of the commission was Japan Biological Informatics Consortium (JBIC) and also the other six research institutes took their parts. The aim of the project is to construct an annotated human gene database of the world highest quality, based on H-Invitational Database (H-InvDB). |
| Keyword | genome | gene | annotation | integrated | database |
| Patent (Japan, overseas) | JP2006323830(A) | JP2008097189(A) |
| Archives | |
| Product (Database, Tool) | Nothing |
| Project name | Life science database integration project |
|---|---|
| Area | Genome Informatics |
| Purpose | This project aims to facilitate the research and development in both industry and academia. |
| Introduction | The project develops a portal site that provides various information on databases and analysis tools for life science which were developed by the projects directly sponsored by METI, or developed by the Institutes sponsored by METI. The second aim is to develop an integrated system to utilize the various outcomes related to METI, based on H-Invitationl DB (all human gene database) that was developed in "Genome Information Integration Project (GIIP)". |
| Keyword | database | analysis tool | product | portal | integration |
| Patent (Japan, overseas) | - |
| Archives | |
| Product (Database, Tool) | Nothing |