More information XML output

Name SEVENS
Aliases None
Description

SEVENS database includes G-protein coupled receptors (GPCR) genes with seven transmembrane helices, that are identified with high accuracy from complete genomes of 32 eukaryotes, by a pipeline integrating such software as a gene finder, a sequence alignment tool, a motif and domain assignment tool, and a TMH predictor.

Type DB
Main Institutes of management Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST)
Country of the Institute Japan
URL of the site http://sevens.cbrc.jp/
Interface GUI
Input example

Select species and input the keyword in the text box, and then push the "submit" button. You can select Chromosome Number, Exon Number, Protein Length, Pseudogene and Family.

Keyword
GPCR (G-protein coupled receptor)| Odorant/olfactory and gustatory receptors| Chemokines and chemotactic factors receptors| taste receptors| metabotropic glutamate and calcium receptors| Insect chemosensory receptors| Opsins| Nematode chemoreceptors| Serpentine receptor-like proteins| Sre proteins| Plant MLO receptors| slime mold receptors| Archaeal/bacterial/fungal opsin family| fungal receptors| BLAST|SOSUI|ALN|HMMER
Amount of the all data for download(Mbyte) | Method to obtain the all data. 7,000 | Not available.
External resources (databases) in building the product. NCBI|KEGG|SWISS-Prot|Pfam
Data type Ptotein-sequence amino acid sequence
Biological species in the main concern
Homo sapiens | Pan troglodytes | Gorilla gorilla | ...
  • Homo sapiens [Taxonomy_id: 9606, human]
  • Pan troglodytes [Taxonomy_id: 9598, chimpanzee]
  • Gorilla gorilla [Taxonomy_id: 9593, western gorilla]
  • Pongo abelii [Taxonomy_id: 9601, Sumatran orangutan]
  • Papio hamadryas [Taxonomy_id: 9557, hamadryas baboon]
  • Macaca muratta [Taxonomy_id: 9544, Rhesus macaque (Rhesus monkey)]
  • Tarsius syrichta [Taxonomy_id: 9478, Philippine tarsier]
  • Callithrix jacchus [Taxonomy_id: 9483, white-tufted-ear marmoset]
  • Ottolemur garnetti [Taxonomy_id: 30611, small-eared galago (bushbaby)]
  • Tupaia belangeri [Taxonomy_id: 37347, northern tree shrew]
  • Erinaceus europaeus [Taxonomy_id: 9365, western European hedgehog]
  • Sorex araneus [Taxonomy_id: 42254, European shrew]
  • Echinops telfairi [Taxonomy_id: 9371, small Madagascar hedgehog (Lesser hedgehog tenrec)]
  • Cavia porcellus [Taxonomy_id: 10141, Domestic guinea pig]
  • Rattus norvegicus [Taxonomy_id: 10116, Norway rat]
  • Mus musculus [Taxonomy_id: 10090, house mouse]
  • Spermophilus tridecemlineatus [Taxonomy_id: 43179, thirteen-lined ground squirrel]
  • Procavia capensis [Taxonomy_id: 9813, cape rock hyrax]
  • Pteropus vampyrus [Taxonomy_id: 132908, large flying fox (megabat)]
  • Myotis lucifugus [Taxonomy_id: 59463, little brown bat (microbat)]
  • Canis familiaris [Taxonomy_id: 9615, dog]
  • Felis catus [Taxonomy_id: 9685, domestic cat]
  • Bos taurus [Taxonomy_id: 9913, cattle]
  • Vicugna pacos [Taxonomy_id: 30538, alpaca]
  • Tursiops truncatus [Taxonomy_id: 9739, bottlenosed dolphin]
  • Oryctolagus cuniculus [Taxonomy_id: 9986, rabbit]
  • Ochotona princeps [Taxonomy_id: 9978, American pika]
  • Loxodonta africana [Taxonomy_id: 9785, African savanna elephant]
  • Dasypus novemcinctus [Taxonomy_id: 9361, nine-banded armadillo]
  • Monodelphis domestica [Taxonomy_id: 13616, gray short-tailed opossum]
  • Macropus eugenii [Taxonomy_id: 9315, tammar wallaby]
  • Ornithorhynchus anatinus [Taxonomy_id: 9258, platypus]
  • Gallus gallus [Taxonomy_id: 9031, chicken]
  • Taeniopygia guttata [Taxonomy_id: 59729, zebra finch]
  • Anolis carolinensis [Taxonomy_id: 28377, green anole]
  • Xenopus tropicalis [Taxonomy_id: 8364, western clawed frog]
  • Oryzias latipes [Taxonomy_id: 8090, Japanese medaka]
  • Gasterosteus aculeatus [Taxonomy_id: 69293, three-spined stickleback]
  • Tetraodon nigroviridis [Taxonomy_id: 99883, spotted green pufferfish]
  • Fugu rubripes [Taxonomy_id: 31033, torafugu]
  • Danio rerio [Taxonomy_id: 7955, zebrafish]
  • Petromyzon marinus [Taxonomy_id: 7757, sea lamprey]
  • Ciona intestinalis [Taxonomy_id: 7719, vase tunicate]
  • Drosophila melanogaster [Taxonomy_id: 7227, fruit fly (fruitfly)]
  • Drosophila simulans [Taxonomy_id: 7240]
  • Drosophila yakuba [Taxonomy_id: 7245]
  • Anopheles gambiae [Taxonomy_id: 7165, African malaria mosquito]
  • Caenorhabditis elegans [Taxonomy_id: 6239, roundworms]
  • Caenorhabditis remanei [Taxonomy_id: 31234]
  • Caenorhabditis brenneri [Taxonomy_id: 135651]
  • Caenorhabditis briggsae [Taxonomy_id: 6238]
  • Arabidopsis thaliana [Taxonomy_id: 3702, thale cress]
  • Oryza sativa [Taxonomy_id: 4530, rice]
  • Dictyostelium discoideum [Taxonomy_id: 44689]
  • Saccharomyces cerevisiae [Taxonomy_id: 4932, baker's yeast (budding yeast)]
Conditions of use Attribution&Noncommercial&Share Alike User account is not required.
Frequency of updates (in last two years) 2
Last date of updates (date of confirmation) 2010/04/28 (2010/05/10)
Main IDs used in the products CBRC-species-2digit numbers-4digit numbers
How to make a link to get access to each IDs. http://sevens.cbrc.jp/detail.php?db=[species]&chr=[chromosome_number]&l=1&r=1053750&twin=0&id=[ID]
external databases to which this database/tool have links

ExPASy Proteomics Server(http://www.expasy.org/), NCBI(http://www.ncbi.nlm.nih.gov/), Pfam(http://pfam.sanger.ac.uk/)

Published papers (PubMed IDs)

PMID: 16126348, Automatic gene collection system for genome-scale overview of G-protein coupled receptors in eukaryotes.

Ono Y, Fujibuchi W, Suwa M. Gene. 2005 Dec 30;364:63-73.

Return to page top

Project name KAKENHI (208059)
Area Genome Informatics
Purpose In order to support high-throughput screening for ligands of G-protein coupled receptors (GPCRs) by using bioinformatics technology, we introduce a database (SEVENS) with genome-scale annotation.
Introduction To perform an overview of the GPCR universe, it is necessary to treat a large data space, which should include not only the expressed sequences but also the newly identified sequences that cannot be detected by experiments, although they definitely exist on the genome sequence and are just waiting for the opportunity to express their functions. For this purpose, we have been developed SEVENS which includes GPCR genes that are identified with high accuracy from complete genomes of eukaryotes.
Keyword GPCR|Genome|Function|annotation|
Patent (Japan, overseas) なし
Product (Database, Tool) Nothing