More information XML output
| Name | WoLF PSORT |
|---|---|
| Aliases | None |
| Description | WoLF PSORT provides 1) prediction of protein subcellular localization from amino acid sequence 2) localization annotation for many proteins
1) is available for arbitrary amino acid sequences. 2) is based on information from uniprot and the literature. |
| Type | Tool |
| Main Institutes of management | Computational Biology Research Center (CBRC),National Institute of Advanced Industrial Science and Technology (AIST) |
| Country of the Institute | Japan |
| URL of the site | http://wolfpsort.org |
| Interface | Web|Web service(SOAP) |
| Input example | Cut and paste an amino acid sequence into the text box on the main page, or upload a multifasta format sequence file. |
| Keyword |
prediction|protein subcellular localization|amino acid sequence
|
| Amount of the all data for download（Mbyte） | Method to obtain the all data. | 12 | You can find the download page for each release by following links from wolfpsort.org |
| External resources (databases) in building the product. | SWISS-Prot |
| Data type | DNA-sequence , Nuclear genome encoded, Eukaryotic proteins |
| Biological species in the main concern |
Eukaryotes
|
| Conditions of use | Attribution&Noncommercial&Share Alike |
| Frequency of updates (in last two years) | 1 |
| Last date of updates (date of confirmation) | 2006/09/01 |
| Main IDs used in the products | Uniprot Accession |
| How to make a link to get access to each IDs. | Not currently supported. |
| external databases to which this database/tool have links | Uniprot(uniprot.ort), Tair(arabidopsis.org), PubMed(ncbi.nlm.nih.gov/entrez/), Gene Ontology(www.geneontology.org) |
| Published papers (PubMed IDs) | 「Prediction of protein subcellular localization from amino acid sequence」, Kenta Nakai・Paul Horton Jikkenigaku、「Development of bioinfomatics tool and Applied to the forefront of life science」、YODOSHA、26(7):140-6, 2008.
Paul Horton・Kenta Nakai, Nakamura・Isoai・Ishikawa・Hirakawa・Bono、"How to apply of bio database and web tool second div"、YODOSHA、2007.
PMID: 17517783 | Paul Horton, Keun-Joon Park, Takeshi Obayashi, Naoya Fujita, Hajime Harada, C.J. Adams-Collier, & Kenta Nakai, "WoLF PSORT: Protein Localization Predictor", Nucleic Acids Research, doi:10.1093/nar/gkm259, 2007.
PMID: 17951705 "Computational Prediction of Subcellular Localization", Kenta Nakai & Paul Horton, Methods Mol Biol., 390:429-66,2007.
Paul Horton, Keun-Joon Park, Takeshi Obayashi & Kenta Nakai, "Protein Subcellular Localization Prediction with WoLF PSORT", Proceedings of the 4th Annual Asia Pacific Bioinformatics Conference APBC06, Taipei, Taiwan. pp. 39-48, 2006. |