More information XML output
| Name | DB-SPIRE |
|---|---|
| Aliases | Database for Structure-based Protein Interaction Research |
| Description | This database includes motif sites of all protein structures in PDB, which are assigned from the motif position in the amino acid sequence. In this database, we use the two kinds of the functional motif databases (i.e. PROSITE and BLOCKS), and search the two kinds of the protein sequence in a PDB file, that is, a sequence described in SEQRES line and in ATOM line for the motif positions in the database. Consequently, the database includes four types of motif site data. |
| Type | DB |
| Main Institutes of management | Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST) |
| Country of the Institute | Japan |
| URL of the site | http://mbs.cbrc.jp/DB-SPIRE/ |
| Interface | GUI |
| Input example | Under investigation |
| Keyword |
Under investigation
|
| Amount of the all data for download（Mbyte） | Method to obtain the all data. | 0 | None |
| External resources (databases) in building the product. | PROSITE | BLOCKS | PDB | SCOP |
| Data type | Protein-motif |
| Biological species in the main concern |
All species
|
| Conditions of use | Under investigation |
| Frequency of updates (in last two years) | 0 |
| Last date of updates (date of confirmation) | 2010/01/18 (2010/01/23) |
| Main IDs used in the products | PDP ID | PROSITE AC | BLOCKS AC |
| How to make a link to get access to each IDs. | Under investigation |
| external databases to which this database/tool have links | Under investigation |
| Published papers (PubMed IDs) | Under investigation |