More information XML output
| Name | VarySysDB |
|---|---|
| Aliases | None |
| Description | This is a system to search, display, and download our research results on human polymorphism based on publicly available data and annotations of transcripts presented by H-InvDB. It provides information about single nucleotide polymorphisms (SNPs), deletion-insertion polymorphisms (DIPs), short tandem repeats (STRs), single amino acid repeats (SARs), structural variation (or copy number variations: CNVs), and their relations to the genome, transcripts, and functional domains. |
| Type | DB |
| Main Institutes of management | Biomedicinal Information Research Center (BIRC), National Institute of Advanced Industrial Science and Technology (AIST) |
| Country of the Institute | Japan |
| URL of the site | http://h-invitational.jp/varygene/home.htm |
| Interface | Search site |
| Input example | Put down "HIX" etc. in the input form on upper right of top page and click "GO" button. |
| Keyword |
Under investigation
|
| Amount of the all data for download（Mbyte） | Method to obtain the all data. | - | None |
| External resources (databases) in building the product. | H-InvDB | dbSNP |
| Data type | |
| Biological species in the main concern |
Human
|
| Conditions of use | Under investigation |
| Frequency of updates (in last two years) | 1 |
| Last date of updates (date of confirmation) | 2010/02/16 (2010/02/17) |
| Main IDs used in the products | HIX(gene cluster) | HUGO Gene Symbol |
| How to make a link to get access to each IDs. | Under investigation |
| external databases to which this database/tool have links | Under investigation |
| Published papers (PubMed IDs) | Under investigation |
| Project name | Genome Information Integration Project (GIIP) |
|---|---|
| Area | Genome Informatics |
| Purpose | # construction of "all human gene catalogue" # development of annotation technique based on H-InvDB # data integration of disease, gene expression and PPI information |
| Introduction | GIIP project was a model project of METI, which executed for 3 years since 2005 to 2007. The representative institute of the commission was Japan Biological Informatics Consortium (JBIC) and also the other six research institutes took their parts. The aim of the project is to construct an annotated human gene database of the world highest quality, based on H-Invitational Database (H-InvDB). |
| Keyword | genome | gene | annotation | integrated | database |
| Patent (Japan, overseas) | JP2006323830(A) | JP2008097189(A) |
| Archives | |
| Product (Database, Tool) | Nothing |
| Project name | Life science database integration project |
|---|---|
| Area | Genome Informatics |
| Purpose | This project aims to facilitate the research and development in both industry and academia. |
| Introduction | The project develops a portal site that provides various information on databases and analysis tools for life science which were developed by the projects directly sponsored by METI, or developed by the Institutes sponsored by METI. The second aim is to develop an integrated system to utilize the various outcomes related to METI, based on H-Invitationl DB (all human gene database) that was developed in "Genome Information Integration Project (GIIP)". |
| Keyword | database | analysis tool | product | portal | integration |
| Patent (Japan, overseas) | - |
| Archives | |
| Product (Database, Tool) | Nothing |