More information XML output

Relating project

Name PPI view
Aliases Protein-Protein Interaction viewer
Description

The PPI view displays H-InvDB human protein-protein interaction (PPI)information. PPI data were collected from five major public PPI databases (BIND, DIP, MINT, HPRD, IntAct) and integrated them as a non-redundant PPI dataset. As the result, we got 32,198 human PPIs comprised of 9,268 proteins. (at H-InvDB version 5.0) The PPI view displays proteins which interact with the usersCHR(39) query proteins (or gene products), and provides links to H-InvDB locus view and cDNA view, which guide you to the gene locations and the detailed gene functional annotations of these interacting proteins, respectively.PPI view: http://www.h-invitational.jp/hinv/ppi/ PPI view sample:http://h-invitational.jp/hinv/ppi/ppi_view.cgi?hip=HIP000084307
Type DB
Main Institutes of management Biomedicinal Information Research Center (BIRC), National Institute of Advanced Industrial Science and Technology (AIST)
Country of the Institute Japan
URL of the site http://www.h-invitational.jp/hinv/ppi/index.html
Interface GUI
Input example

We can search for our proteins of interest by inputting their keywords, H-InvDB IDs, or accession numbers on the search window of the top page (http://www.h-invitational.jp/hinv/ppi/index.html).
Keyword
PPI | protein-protein interaction
Amount of the all data for download（Mbyte） | Method to obtain the all data. 0.0 | None
External resources (databases) in building the product. BIND http://www.bind.ca/Action|DIP http://dip.doe-mbi.ucla.edu|MINT http://mint.bio.uniroma2.it/mint/Welcome.do|HPRD http://www.hprd.org|IntAct http://www.ebi.ac.uk/intact/index.jsp|GNP_Y2H http://genomenetwork.nig.ac.jp/public/sys/gnppub/Top.do
Data type Protein-Proteome
Biological species in the main concern Human
Conditions of use Freely available
Frequency of updates (in last two years) 1
Last date of updates (date of confirmation) 2010/09/10 (2010/09/15)
Main IDs used in the products H-InvDB ID (HIP,HIT,HIX)
How to make a link to get access to each IDs. Under investigation
external databases to which this database/tool have links

http://www.h-invitational.jp/hinv/ppi/ppi_view.cgi?hip=HIP000094442
Published papers (PubMed IDs)

Under investigation

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Project name Genome Information Integration Project (GIIP)
Area Genome Informatics
Purpose # construction of "all human gene catalogue" # development of annotation technique based on H-InvDB # data integration of disease, gene expression and PPI information
Introduction GIIP project was a model project of METI, which executed for 3 years since 2005 to 2007. The representative institute of the commission was Japan Biological Informatics Consortium (JBIC) and also the other six research institutes took their parts. The aim of the project is to construct an annotated human gene database of the world highest quality, based on H-Invitational Database (H-InvDB).
Keyword genome | gene | annotation | integrated | database
Patent (Japan, overseas) JP2006323830(A) | JP2008097189(A)
Archives
The report on "Genome Information Integration Project (GIIP)" 2005-2007. Japanese.
Product (Database, Tool) Nothing

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Project name Life science database integration project
Area Genome Informatics
Purpose This project aims to facilitate the research and development in both industry and academia.
Introduction The project develops a portal site that provides various information on databases and analysis tools for life science which were developed by the projects directly sponsored by METI, or developed by the Institutes sponsored by METI. The second aim is to develop an integrated system to utilize the various outcomes related to METI, based on H-Invitationl DB (all human gene database) that was developed in "Genome Information Integration Project (GIIP)".
Keyword database | analysis tool | product | portal | integration
Patent (Japan, overseas) -
Archives
The report on "METI life science database project" 2008-2011. Japanese.
Product (Database, Tool) Nothing