More information XML output
| Name | G-compass |
|---|---|
| Aliases | G-compass : Comparative genome browser |
| Description | G-compass was designed as a tool for the study of comparative genomics. It provides the data of evolutionarily conserved genomic regions and orthologous genes between human and 12 vertebrates (chimpanzee, rhesus monkey, mouse, rat, dog, cow, horse, opossum, chicken, zebrafish, medaka and Tetraodon). Information of ultraconserved elements (UCE) and copy number variable regions (CNV) are provided. Sliding window analysis and dot plot analysis are also implemented. |
| Type | DB |
| Main Institutes of management | Biomedicinal Information Research Center (BIRC), National Institute of Advanced Industrial Science and Technology (AIST) |
| Country of the Institute | Japan |
| URL of the site | http://www.h-invitational.jp/g-compass/ |
| Interface | Search site |
| Input example | At "Evola search ortholog" of Top/Search page, select "Keyword" from pull-down menu, input "calmodulin" in textbox and push "submit" button. |
| Keyword |
Genome alignment | annotation
|
| Amount of the all data for download（Mbyte） | Method to obtain the all data. | 7400.0 | Download page (http://www.h-invitational.jp/evola/download.html) |
| External resources (databases) in building the product. | H-InvDB | DDBJ | Ensembl | Refseq | UCSC |
| Data type | Comparative genomics |
| Biological species in the main concern |
Human
|
| Conditions of use | Under investigation |
| Frequency of updates (in last two years) | 4 |
| Last date of updates (date of confirmation) | 2008/05 (2009/01/20) |
| Main IDs used in the products | HIX(gene cluster) | HIT(transcript) | Accession Number | HUGO Gene Symbol | InterPro ID |
| How to make a link to get access to each IDs. | Under investigation |
| external databases to which this database/tool have links | http://www.h-invitational.jp/g-compass/cgi-bin/gc_main.cgi?hit=[HIT ID]&species_1=[SPECIES1 (e.g. hg18)]&species_2=[SPECIES2(e.g. pt2)] |
| Published papers (PubMed IDs) | 16169162 |
| Project name | Genome Information Integration Project (GIIP) |
|---|---|
| Area | Genome Informatics |
| Purpose | # construction of "all human gene catalogue" # development of annotation technique based on H-InvDB # data integration of disease, gene expression and PPI information |
| Introduction | GIIP project was a model project of METI, which executed for 3 years since 2005 to 2007. The representative institute of the commission was Japan Biological Informatics Consortium (JBIC) and also the other six research institutes took their parts. The aim of the project is to construct an annotated human gene database of the world highest quality, based on H-Invitational Database (H-InvDB). |
| Keyword | genome | gene | annotation | integrated | database |
| Patent (Japan, overseas) | JP2006323830(A) | JP2008097189(A) |
| Archives | |
| Product (Database, Tool) | Nothing |
