More information XML output
| Name | Hyperlink Management System |
|---|---|
| Aliases | biodb.jp |
| Description | Hyperlink Management System is an original tool for setting hyperlinks to major databases related to human genes and proteins worldwide. For details, please refer to the document here (http://staff.aist.go.jp/t.imanishi/about_hms.html). |
| Type | Tool |
| Main Institutes of management | Biomedicinal Information Research Center (BIRC), National Institute of Advanced Industrial Science and Technology (AIST) |
| Country of the Institute | Japan |
| URL of the site | http://biodb.jp/ |
| Interface | GUI | CGI |
| Input example | A hyperlink to H-InvDB (Transcript view) using Accession Number "BC053657": http://biodb.jp/hfs.cgi?id=BC053657&type=ACC_ID&db=TRANSCRIPTVIEW |
| Keyword |
Under investigation
|
| Amount of the all data for download（Mbyte） | Method to obtain the all data. | unknown | in preparation |
| External resources (databases) in building the product. | DDBJ | EMBL | GenBank | H-InvDB | UniProt | PDB | HUGO |
| Data type | Data identifiers (IDs) |
| Biological species in the main concern |
Human
|
| Conditions of use | Attribution&Share Alike |
| Frequency of updates (in last two years) | 730 |
| Last date of updates (date of confirmation) | 2011/10/26 (2011/10/28) |
| Main IDs used in the products | Accession Number | UniProt ID | PDB ID | HUGO Gene Symbol | HIX(gene cluster) | HIT(transcript) |
| How to make a link to get access to each IDs. | http://biodb.jp/hfs.cgi?id=[ID]&type=[ID Type]&db=[Database name] |
| external databases to which this database/tool have links | Under investigation |
| Published papers (PubMed IDs) | "Hyperlink Management System and ID Converter System: enabling maintenance-free hyperlinks among major biological databases" Nucleic Acids Res. 2009 Jul 1;37:W17-22. |
| Project name | Life science database integration project |
|---|---|
| Area | Genome Informatics |
| Purpose | This project aims to facilitate the research and development in both industry and academia. |
| Introduction | The project develops a portal site that provides various information on databases and analysis tools for life science which were developed by the projects directly sponsored by METI, or developed by the Institutes sponsored by METI. The second aim is to develop an integrated system to utilize the various outcomes related to METI, based on H-Invitationl DB (all human gene database) that was developed in "Genome Information Integration Project (GIIP)". |
| Keyword | database | analysis tool | product | portal | integration |
| Patent (Japan, overseas) | - |
| Archives | |
| Product (Database, Tool) | Nothing |
