More information
| Name | GenoBase |
|---|---|
| Aliases | GenoBase |
| Description | Scope of database (GenoBase) is to understand comprehensively the living-cell system of Escherichia coli K-12 (W3110). Until now, GenoBase is the public repository for Sequence Information, Proteome, Transcriptome, Bioinformatics, and Knowledge based on literature concerning E.coli. The results of the NEDO project was contained. |
| Type | DB |
| Main Institutes of management | NARA INSTITUTE of SCIENCE and TECHNOLOGY (NAIST) | PURDUE UNIVERSITY |
| Country of the Institute | Japan |
| URL of the site | http://ecoli.aist-nara.ac.jp/gb6/WGB/intro.html | http://sal.cs.purdue.edu:8097/GB7/index.jsp |
| Interface | GUI |
| Input example | [by keyword] Enter a word for JW no, ECK no, gene id, gene name or biological keywords, then push "Search" button. [by homology] Input DNA Sequence or Amino acid sequence and select homology search program, then push "Search" button. [CategoricalSearch] Select DNA SIZE(bp), Genomic region(bp) or Genomic region(min) for ORF, RNA or Transcription. Then input genome position and push "Search" button. [clip sequence] Input Start/End position (1 .. 4646332 ) or input DNA sequence in the text area. Then push Convert (Clip/Convert) button. |
| Amount of the all data for download（Mbyte） | Method to obtain the all data. | 20 (Genome data) | Download from the page http://sal.cs.purdue.edu:8097/GB7/index.jsp?page=genome_download.jsp |
| External resources (databases) in building the product. | None |
| Data type | Annotation |
| Biological species in the main concern | E.Coli |
| Conditions of use | None |
| Frequency of updates (in last two years) | 1 time/year |
| Last date of updates (date of confirmation) | 2009/01 (2010/01/25) |
| Main IDs used in the products | JW | ECK |
| How to make a link to get access to each IDs. | http://ecoli.aist-nara.ac.jp/GB6/info.jsp?id=JW3212 |
| external databases to which this database/tool have links | EcoliCommunity (http://www.ecolicommunity.org/) |
| Published papers (PubMed IDs) | 16738554 |