More information XML output
| Name | OpenPML |
|---|---|
| Aliases | Under investigation |
| Description | The study of correlations between genome variation and phenotype diversity is a key theme in the current biosciencefield. This has lead to a large number of different studies generating huge amounts of data, which typically must be shared amongst many collaborators and researchers. To store and use such data efficiently, it is paramount that biomedical researchers describe the data in a compatible and similar way. The Japan Biological Informatics Consortium has developed a data model(PaGE-OM:Phenotype and Genotype-Object Model), which have validated PaGE-OM by applying it to various existing phenotype and genotype databases, and will demonstrating how further databases can be expressed in the PaGE-OM. （cited from original site） |
| Type | DB |
| Main Institutes of management | Japan Biological Informatics consortium | DNA Data Bank of Japan |
| Country of the Institute | Japan |
| URL of the site | http://www.openpml.org/ |
| Interface | GUI |
| Input example | Select JSNP.xml on the left side menu bar "PML Schema Samples". |
| Keyword |
genome variation | phenotype diversity | PaGE-OM
|
| Amount of the all data for download（Mbyte） | Method to obtain the all data. | 0 | None |
| External resources (databases) in building the product. | None |
| Data type | DNA-polymol |
| Biological species in the main concern |
All species
|
| Conditions of use | None |
| Frequency of updates (in last two years) | No update for more than 2 years |
| Last date of updates (date of confirmation) | 2007/00/00(2009/11/10) |
| Main IDs used in the products | N/A |
| How to make a link to get access to each IDs. | None |
| external databases to which this database/tool have links | |
| Published papers (PubMed IDs) | Under investigation |
| Project name | Standardization project of genotype and phenotype database format |
|---|---|
| Area | Biotechnology・Medical technology |
| Purpose | The purpose of this project is to develop integrated use for the genotype and phenotype data base with a big meaning aiming at the achievement of the individual healthcare and the drug administering optimization, etc. by Japan initiation. By that the study results of Japan are promptly sent to the world. In addition, study results all over the world are promptly obtained. Japan Biological Information Consortium (JBIC) has already developed Polymorphism Markup Language (PML) as the OMG standard of genotype data description format under the bio-data standardization project of the Ministry of Economy, Trade and Industry. And also JBIC has developed the request for proposal of the standard description format of genotype-phenotype database. We develop the standard description format of genotype and phenotype database under PML and the request for proposal. We apply it to the Database constructed by the NEDO project, Genomic polymorphism analysis and evaluate the efficacy of it. |
| Introduction | We developed the DNA Variation and Phenotype Data model as the standard data description format of genotype and phenotype database. It was approved as the OMG standard. Moreover we published the PML which is the radical model of DNA Variation and Phenotype Data model at the International Conference. |
| Keyword | DNA Variation and Phenotype Database | standardization |
| Patent (Japan, overseas) | Under investigation |
| Product (Database, Tool) | Nothing |