More information XML output

Name FLJ Human cDNA Database
Aliases None
Description

FLJ human cDNA database was constructed as human cDNA sequence analysis database focused on mRNA varieties caused by variations of transcription start site (TSS) and splicing.

Human gene number was estimated to be 20-25 thousand. However number of human mRNA varieties was predicted to be about 100 thousand. The varieties are thought to be caused by variations of TSS and splicing. In our previous human cDNA project, about 30 thousand of FLJ human full-length sequenced cDNAs were deposited to DDBJ/GenBank/EMBL, and we obtained about 1.4 million of 5'-end sequences (5'-EST) of FLJ full-length cDNAs from about 100 kinds of cDNA libraries consist of human tissues and cells constructed by oligo-capping method.(cited from original site)

Type DB
Main Institutes of management AIST | BIRC
Country of the Institute Japan
URL of the site http://flj.lifesciencedb.jp/
Interface GUI
Input example

Select a database at Top:Database, input the sequence ID "BRACE3039378" in "ID" text box, push "Submit" button.
Keyword
Human | full length cDNA | clone | transcription start site
Amount of the all data for download（Mbyte） | Method to obtain the all data. 379 | Download from the page http://flj.lifesciencedb.jp/top/sys_info/02_about_database/accession_no/accession_no_v031.htm
External resources (databases) in building the product. KIAA|MGC|DKFZ|RefSeq|Ensembl|UniGene|UCSC
Data type DNA-sequence full length cDNA
Biological species in the main concern Human
Conditions of use Under investigation
Frequency of updates (in last two years) Under investigation
Last date of updates (date of confirmation) 2010/09/24 (2011/09/29)
Main IDs used in the products cDNA ID | clone ID
How to make a link to get access to each IDs. http://flj.lifesciencedb.jp/v031/cgi/sv_cdna_info.cgi?cdna=C-[cloneID]
external databases to which this database/tool have links

Under investigation
Published papers (PubMed IDs)

Under investigation