More information XML output

Name DOGAN
Aliases Database of Genome Analyzed at NITE
Description

You can get the results of microbial sequence data, gene information (ORF), gene map, motifs, paper as the basis of estimated genes and proteome analysis from DOGAN. This information has been published to confirm the annotater, re-annotation is also in line with the passage of time. In addition, Blast homology search using the service and, DNA cloning service orders.
Type DB
Main Institutes of management National Institute of Technology and Evaluation.
Country of the Institute Japan
URL of the site http://www.bio.nite.go.jp/dogan/Top
Interface GUI
Input example

Push "GO" button after input the keyword "kinase" in the text box.
Keyword
Aspergillus oryzae RIB40 | Saccharomyces cerevisiae Kyokai no. 7 | Aeropyrum pernix K1 (hyperthermophilic archaeon) | ...
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  • Aspergillus oryzae RIB40
  • Saccharomyces cerevisiae Kyokai no. 7
  • Aeropyrum pernix K1 (hyperthermophilic archaeon)
  • Sulfolobus tokodaii strain 7 (hyperthermophilic archaeon)
  • Methanocella paludicola SANAE (methane-producing archeon)
  • Pyrococcus horikoshii OT3 (hyperthermophilic archaeon)
  • Kitasatospora setae KM-6054
  • Rhodococcus opacus B4
  • Rhodococcus erythropolis PR4
  • Kocuria rhizophila DC2201
  • Microlunatus phosphovorus NM-1
  • Corynebacterium efficiens YS-314 (glutamic acid-producing bacterium)
  • Streptomyces avermitilis MA-4680
  • Anaerolinea thermophila UNI-1
  • Deferribacter desulfuricans SSM1
  • Staphylococcus haemolyticus JCSC1435
  • Staphylococcus aureus subsp. aureus MW2
  • Staphylococcus aureus subsp. aureus N315
  • Brevibacillus brevis NBRC 100599
  • Gemmatimonas aurantiaca T-27
  • Arthrospira platensis NIES-39 (spirulina)
  • Acetobacter pasteurianus IFO 3283-32 (acetic bacterium)
  • Acidiphilium multivorum AIU301
  • Sphingobium japonicum UT26S
  • Sphingobium sp. SYK-6
  • Desulfovibrio magneticus RS-1
  • Salmonella enterica subsp. enterica serovar Typhimurium str. T000240
Amount of the all data for download（Mbyte） | Method to obtain the all data. 80 | http://www.bio.nite.go.jp/dogan/DataDownload
External resources (databases) in building the product. PubMed | UniProt | InterPro | KEGG
Data type DNA-sequence , Proteome
Biological species in the main concern
Aspergillus oryzae RIB40 | Saccharomyces cerevisiae Kyokai no. 7 | Aeropyrum pernix K1 | ...
More information More
  • Aspergillus oryzae RIB40 [Taxonomy_id: 510516]
  • Saccharomyces cerevisiae Kyokai no. 7 [Taxonomy_id: 721032, baker's yeast]
  • Aeropyrum pernix K1 [Taxonomy_id: 272557]
  • Sulfolobus tokodaii strain 7 [Taxonomy_id: 273063]
  • Methanocella paludicola SANAE [Taxonomy_id: 304371]
  • Pyrococcus horikoshii OT3 [Taxonomy_id: 70601]
  • Kitasatospora setae KM-6054 [Taxonomy_id: 452652]
  • Rhodococcus opacus B4 [Taxonomy_id: 632772]
  • Rhodococcus erythropolis PR4 [Taxonomy_id: 234621]
  • Kocuria rhizophila DC2201 [Taxonomy_id: 378753]
  • Microlunatus phosphovorus NM-1 [Taxonomy_id: 1032480]
  • Corynebacterium efficiens YS-314 [Taxonomy_id: 196164, corynebacterium]
  • Streptomyces avermitilis MA-4680 [Taxonomy_id: 227882]
  • Anaerolinea thermophila UNI-1 [Taxonomy_id: 926569]
  • Deferribacter desulfuricans SSM1 [Taxonomy_id: 639282]
  • Staphylococcus haemolyticus JCSC1435 [Taxonomy_id: 279808]
  • Staphylococcus aureus subsp. aureus MW2 [Taxonomy_id: 196620]
  • Staphylococcus aureus subsp. aureus N315 [Taxonomy_id: 158879]
  • Brevibacillus brevis NBRC 100599 [Taxonomy_id: 358681]
  • Gemmatimonas aurantiaca T-27 [Taxonomy_id: 379066]
  • Arthrospira platensis NIES-39 [Taxonomy_id: 696747, blue-green algae]
  • Acetobacter pasteurianus IFO 3283-32 [Taxonomy_id: 634457]
  • Acidiphilium multivorum AIU301 [Taxonomy_id: 926570]
  • Sphingobium japonicum UT26S [Taxonomy_id: 452662]
  • Sphingobium sp. SYK-6 [Taxonomy_id: 627192]
  • Desulfovibrio magneticus RS-1 [Taxonomy_id: 573370]
  • Salmonella enterica subsp. enterica serovar Typhimurium str. T000240 [Taxonomy_id: 718274]
Conditions of use None
Frequency of updates (in last two years) 11
Last date of updates (date of confirmation) 2011/09/09 (2011/09/10)
Main IDs used in the products ORF_ID | NF_ID
How to make a link to get access to each IDs. http://www.bio.nite.go.jp/dogan/ProteinInformation?ORF_ID=[ORFID]
external databases to which this database/tool have links

UniProt (http://www.uniprot.org/), HAMAP(http://www.expasy.org/sprot/hamap/), InterPro(http://www.ebi.ac.uk/interpro/), Pfam(http://pfam.sanger.ac.uk/), PROSITE(http://ca.expasy.org/prosite/), TIGRFAMs(http://www.jcvi.org/cms/research/projects/tigrfams/overview/), COG(http://www.ncbi.nlm.nih.gov/COG/), MEROPS(http://merops.sanger.ac.uk/), TCDB(http://www.tcdb.org/), KEGG(http://www.genome.jp/kegg/), DDBJ(http://www.ddbj.nig.ac.jp/), NCBI(http://www.ncbi.nlm.nih.gov/), EMBL(http://www.ebi.ac.uk/embl/), GOLD(http://www.genomesonline.org/), Genome project of Streptomyces avermitilis(http://avermitilis.ls.kitasato-u.ac.jp)
Published papers (PubMed IDs)

None