More information XML output
| Name | MDV |
|---|---|
| Aliases | Motif Distribution Viewer |
| Description | Motif Distribution Viewer (MDV) is a web tool for visualizing the distribution of various motifs around transcription start sites (TSS) on a user-defined set of promoter sequences. The tool can be used on the original site, as well as downloaded to used locally. (cited from original site). |
| Type | Tool |
| Main Institutes of management | Biomedicinal Information Research Center (BIRC), National Institute of Advanced Industrial Science and Technology (AIST) |
| Country of the Institute | Japan |
| URL of the site | http://h-invitational.jp/mdv/ |
| Interface | GUI |
| Input example | Step1: Select a gene set and, if needed, input IDs to examine (HIX or RefSeq ID). Step 2: Set parameters. Step 3: Select a motif-view from the four and click“Submit” button of your choice. |
| Keyword |
cis-element|promoter|transcription start site (TSS)|two-dimensional display|multiple motifs|microarray
|
| Amount of the all data for download（Mbyte） | Method to obtain the all data. | 207 | http://h-invitational.jp/mdv/doc/download.html |
| External resources (databases) in building the product. | H-InvDB | RefSeq | DBTSS | JASPAR |
| Data type | DNA-motif |
| Biological species in the main concern |
Human, mouse promoters are available on the site.
|
| Conditions of use | Attribution&Share Alike |
| Frequency of updates (in last two years) | 0 |
| Last date of updates (date of confirmation) | 2008/09/20 (2009/09/29) |
| Main IDs used in the products | HIX | RefSeq accession |
| How to make a link to get access to each IDs. | None |
| external databases to which this database/tool have links | - |
| Published papers (PubMed IDs) | None |
| Project name | Genome Information Integration Project (GIIP) |
|---|---|
| Area | Genome Informatics |
| Purpose | # construction of "all human gene catalogue" # development of annotation technique based on H-InvDB # data integration of disease, gene expression and PPI information |
| Introduction | GIIP project was a model project of METI, which executed for 3 years since 2005 to 2007. The representative institute of the commission was Japan Biological Informatics Consortium (JBIC) and also the other six research institutes took their parts. The aim of the project is to construct an annotated human gene database of the world highest quality, based on H-Invitational Database (H-InvDB). |
| Keyword | genome | gene | annotation | integrated | database |
| Patent (Japan, overseas) | JP2006323830(A) | JP2008097189(A) |
| Archives | |
| Product (Database, Tool) | Nothing |
