More information
| Name | TACT |
|---|---|
| Aliases | Transcriptome Auto-annotation Conducting Tool |
| Description | Transcriptome Auto-annotation Conducting Tool (TACT) is a web-based automated prediction tool of functional annotation that was developed by integrating ORF prediction, similarity search (BLASTX and FASTY) and motif prediction (InterProScan). TACT was produced in collaboration with the H-Invitational project, and has contributed to the development of the H-Invitational Database (H-InvDB). |
| Type | Tool |
| Main Institutes of management | Biomedicinal Information Research Center (BIRC), National Institute of Advanced Industrial Science and Technology (AIST) |
| Country of the Institute | Japan |
| URL of the site | http://www.h-invitational.jp/tact/ |
| Interface | GUI |
| Input example | At the top page, enter the query nucleotide sequences or DDBJ accession number and click on "Submit". |
| Amount of the all data for download（Mbyte） | Method to obtain the all data. | 0.0 | None |
| External resources (databases) in building the product. | DDBJ/EMBL/GenBank | Ensembl | Gene ontology (GO) | H-InvDB | InterPro | RefSeq | UCSC | UniProt |
| Data type | DNA-sequence |
| Biological species in the main concern | Human non-human 41 species (http://h-invitational.jp/tact/species.html) |
| Conditions of use | Attribution&No Derivative Works User account is １not required. |
| Frequency of updates (in last two years) | 9 |
| Last date of updates (date of confirmation) | 2008/03/03 (2008/10/06) |
| Main IDs used in the products | Transcript ID (DDBJ accession for H-InvDB transcripts) |
| How to make a link to get access to each IDs. | http://h-invitational.jp/tact/cgi-bin/tact.cgi?acc=[DDBJ accession] |
| external databases to which this database/tool have links | H-InvDB(http://www.h-invitational.jp/) |
| Published papers (PubMed IDs) | Under investigation |
| Project name | Genome Information Integration Project (GIIP) |
|---|---|
| Area | Genome Informatics |
| Purpose | # construction of "all human gene catalogue" # development of annotation technique based on H-InvDB # data integration of disease, gene expression and PPI information |
| Introduction | GIIP project was a model project of METI, which executed for 3 years since 2005 to 2007. The representative institute of the commission was Japan Biological Informatics Consortium (JBIC) and also the other six research institutes took their parts. The aim of the project is to construct an annotated human gene database of the world highest quality, based on H-Invitational Database (H-InvDB). |
| Keyword | genome | gene | annotation | integrated | database |
| Patent (Japan, overseas) | JP-2006-323830 | JP-2008-097189 |
| Archives | |
| Product (Database, Tool) | Nothing |
