More information XML output

Relating project

Name Evola
Aliases Evola: Evolutionary annotation database
Description

Evola (Evolutionary annotation database) is a database providing ortholog information of H-InvDB human genes. Evola contains orthologs among human and 14 vertebrates (chimpanzee, macaque, mouse, rat, dog, horse, cow, opossum, chicken, zebrafish, medaka, Tetraodon, and fugu). Evolutionary bioligical information such as protein multiple alignments, phylogenetic trees, transcript variants, and the degree of natural selection (dN/dS) are implemented.
Type DB
Main Institutes of management Biomedicinal Information Research Center (BIRC), National Institute of Advanced Industrial Science and Technology (AIST)
Country of the Institute Japan
URL of the site http://www.h-invitational.jp/evola/
Interface GUI
Input example

At "Search" of the top page, select "Chimpanzee" from Target species menu, select "Human" and "Definition" from Keyword menus, input "calmodulin" in textbox and push "Search" button.
Keyword
paralog | comparative genomics | vertebrates
Amount of the all data for download（Mbyte） | Method to obtain the all data. 900.0 | http://www.h-invitational.jp/evola/download.html
External resources (databases) in building the product. H-InvDB | DDBJ | Ensembl | RefSeq | UCSC | GO | InterPro | HGNC
Data type Comparative genomics
Biological species in the main concern
Homo sapiens | Pan troglodytes | Pongo abelii | ...
More information More
  • Homo sapiens [Taxonomy_id: 9606, human]
  • Pan troglodytes [Taxonomy_id: 9598, chimpanzee]
  • Pongo abelii [Taxonomy_id: 9601, Sumatran orangutan]
  • Macaca muratta [Taxonomy_id: 9544, Rhesus macaque (Rhesus monkey)]
  • Mus musculus [Taxonomy_id: 10090, house mouse]
  • Rattus norvegicus [Taxonomy_id: 10116, Norway rat]
  • Canis familiaris [Taxonomy_id: 9615, dog]
  • Bos taurus [Taxonomy_id: 9913, cattle]
  • Equus caballus [Taxonomy_id: 9796, horse]
  • Monodelphis domestica [Taxonomy_id: 13616, gray short-tailed opossum]
  • Gallus gallus [Taxonomy_id: 9031, chicken]
  • Oryzias latipes [Taxonomy_id: 8090, Japanese medaka]
  • Tetraodon nigroviridis [Taxonomy_id: 99883, spotted green pufferfish]
  • Fugu rubripes [Taxonomy_id: 31033, torafugu]
  • Danio rerio [Taxonomy_id: 7955, zebrafish]
Conditions of use Attribution&Share Alike
Frequency of updates (in last two years) 8
Last date of updates (date of confirmation) 2010/12/03 (2010/12/06)
Main IDs used in the products HIT(transcript) | Accession Number | HUGO Gene Symbol
How to make a link to get access to each IDs. http://h-invitational.jp/hinv/evola/annotation?AccessionNum=[HIT ID]
external databases to which this database/tool have links

H-InvDB | DDBJ | Ensembl | RefSeq | UCSC | GO | InterPro | HGNC
Published papers (PubMed IDs)

17982176

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Project name Genome Information Integration Project (GIIP)
Area Genome Informatics
Purpose # construction of "all human gene catalogue" # development of annotation technique based on H-InvDB # data integration of disease, gene expression and PPI information
Introduction GIIP project was a model project of METI, which executed for 3 years since 2005 to 2007. The representative institute of the commission was Japan Biological Informatics Consortium (JBIC) and also the other six research institutes took their parts. The aim of the project is to construct an annotated human gene database of the world highest quality, based on H-Invitational Database (H-InvDB).
Keyword genome | gene | annotation | integrated | database
Patent (Japan, overseas) JP2006323830(A) | JP2008097189(A)
Archives
The report on "Genome Information Integration Project (GIIP)" 2005-2007. Japanese.
Product (Database, Tool) Nothing